SMTL ID : 8v5f.1

Nan Regulatory Protein Full-length from Streptococcus pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-tetramer

Ligands

7 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.140 Chain B: R.140 Chain C: R.140 Chain D: R.140 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain D Salt bridges: C:R.140, A:R.140, D:R.140 Hydrogen bonds: B:R.140 PO4.2: 7 residues within 4Å: Chain A: T.132, S.135, F.178, S.179, L.180, S.181, T.184 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.132, A:S.135, A:S.135, A:L.180, A:S.181, A:S.181, A:T.184 PO4.3: 1 residues within 4Å: Chain A: R.67 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.67 PO4.6: 6 residues within 4Å: Chain B: S.135, F.178, S.179, L.180, S.181, T.184 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.135, B:F.178, B:L.180, B:S.181, B:S.181, B:T.184 PO4.7: 3 residues within 4Å: Chain B: S.50, A.52, R.56 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.50, B:S.50 Salt bridges: B:R.56 PO4.11: 7 residues within 4Å: Chain C: T.132, S.135, F.178, S.179, L.180, S.181, T.184 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.135, C:L.180, C:S.181, C:S.181 Water bridges: C:S.181, C:S.181 PO4.14: 7 residues within 4Å: Chain D: T.132, S.135, F.178, S.179, L.180, S.181, T.184 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:S.135, D:S.135, D:L.180, D:S.181, D:S.181, D:T.184, D:T.184, D:T.184

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: Q.106 Chain B: V.84, S.85, K.86, H.87 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Salt bridges: B:K.86, B:H.87 Hydrogen bonds: A:Q.106 SO4.8: 1 residues within 4Å: Chain B: R.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.67, B:R.67 SO4.9: 4 residues within 4Å: Chain A: S.99, R.102 Chain B: S.99, R.102 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.99, B:S.99, A:S.99 Salt bridges: B:R.102, A:R.102 SO4.12: 4 residues within 4Å: Chain C: S.99, R.102 Chain D: S.99, R.102 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:S.99, C:S.99 Salt bridges: C:R.102, D:R.102 SO4.15: 1 residues within 4Å: Chain D: R.67 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.67

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: S.97, H.224, S.225, Q.226, R.232, I.233 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain B: S.97, H.224, S.225, Q.226, R.232, I.233 Ligand excluded by PLIP CL.13: 6 residues within 4Å: Chain C: S.97, H.224, S.225, Q.226, R.232, I.233 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain D: S.97, H.224, S.225, Q.226, R.232, I.233 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wood, D.M. et al., Structure of full-length nan-regulatory protein (NanR) from Streptococcus pneumoniae. To Be Published

Release Date

2024-12-04

Peptides

Phosphosugar-binding transcriptional regulator: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Phosphosugar-binding transcriptional regulator

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