SMTL ID : 8v5r.1

Active conformation of DNA polymerase gamma bound to DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.880, V.881, D.1125 Ligands: D3T.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.881, A:D.1125

1 x D3T: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

D3T.2: 17 residues within 4Å: Chain A: R.843, D.880, V.881, D.882, S.883, E.885, H.922, R.933, K.937, I.938, Y.941, Y.945, D.1125 Chain D: T.51 Chain E: A.29, A.30 Ligands: MG.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:E.885, A:Y.941, A:Y.941 Hydrogen bonds: A:R.843, A:V.881, A:S.883, A:Q.884, A:Y.941, A:Y.941 Salt bridges: A:K.915, A:H.922, A:R.933, A:K.937, A:K.937, A:K.937

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riccio, A.A. et al., Coordinated DNA polymerization by Pol gamma and the region of LonP1 regulated proteolysis. Nucleic Acids Res. (2024)

Release Date

2024-07-10

Peptides

DNA polymerase subunit gamma-1: A
DNA polymerase subunit gamma-2, mitochondrial: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA polymerase subunit gamma-1

DNA polymerase subunit gamma-2, mitochondrial

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