SMTL ID : 8v76.1

Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x YIU: N-{(3P)-3-[(5P)-5-(2H-tetrazol-5-yl)-2,1-benzoxazol-3-yl]phenyl}cyclopentanecarboxamide(Non-covalent)

YIU.1: 18 residues within 4Å: Chain A: I.20, Q.22, V.28, K.30, P.66, L.85, E.86, D.87, V.88, T.89, I.97, D.99, G.135, M.136, R.137, L.209, I.229, D.230 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.20, A:I.20, A:V.28, A:P.66, A:L.85, A:T.89, A:I.97, A:I.97, A:D.99, A:R.137, A:L.209, A:I.229 Hydrogen bonds: A:K.30, A:V.88, A:D.230 Water bridges: A:K.30, A:K.30

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: Y.139, H.140, V.141, H.142, N.172, G.173, Y.174 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.141, A:H.142, A:N.172, A:G.173, A:Y.174 Salt bridges: A:H.140, A:H.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Structure-based development of IPMK kinase inhibitors. To Be Published

Release Date

2024-12-11

Peptides

Inositol polyphosphate multikinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Inositol polyphosphate multikinase

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