SMTL ID : 8v8f.1

The co-crystal structure of anti-HIV scFv and Utag

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

hetero-4-4-mer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: D.64, K.67 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.67 SO4.2: 3 residues within 4Å: Chain A: Y.173, K.238 Chain D: K.15 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Salt bridges: D:K.15, A:K.238 SO4.3: 5 residues within 4Å: Chain B: S.54, S.55, G.56, S.57, S.58 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.54, B:S.55, B:S.55, B:G.56, B:S.58, B:S.58 Water bridges: B:T.59 SO4.4: 3 residues within 4Å: Chain B: Y.173, Y.174 Chain H: M.1 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain B Hydrogen bonds: H:M.1, B:Y.174 SO4.5: 4 residues within 4Å: Chain B: Q.183, K.185, K.191 Chain C: E.225 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.185, B:K.191 SO4.6: 1 residues within 4Å: Chain C: K.67 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.67 SO4.7: 5 residues within 4Å: Chain D: S.54, S.55, G.56, S.57, S.58 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:S.54, D:S.54, D:S.55, D:G.56, D:S.58, D:S.58 SO4.8: 3 residues within 4Å: Chain D: Y.173, Y.174 Chain G: M.1 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain D Hydrogen bonds: G:M.1, D:Y.173, D:Y.174 SO4.9: 2 residues within 4Å: Chain A: Y.173 Chain E: M.1 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: A:Y.173, E:M.1 Salt bridges: D:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, N. et al., anti-HIV protease intracellular antibody scFv. To Be Published

Release Date

2024-12-11

Peptides

anti-HIV scFv: ABCD
Utag: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

E
E

F
F

G
G

H
H

anti-HIV scFv

Utag

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