SMTL ID : 8v8g.1 (1 other biounit)

Room-temperature X-ray structure of SARS-CoV-2 main protease catalytic domain (residues 1-196) in complex with ensitrelvir (ESV)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 7YY: 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione(Non-covalent)

7YY.1: 18 residues within 4Å: Chain A: T.25, T.26, T.27, L.28, H.42, F.141, L.142, N.143, G.144, S.145, C.146, H.164, H.165, M.166, E.167, D.188, R.189, Q.190 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.26 Hydrogen bonds: A:T.27, A:G.144, A:S.145, A:S.145, A:C.146, A:E.167 Water bridges: A:Q.190 pi-Stacking: A:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kovalevsky, A. et al., Visualizing the Active Site Oxyanion Loop Transition Upon Ensitrelvir Binding and Transient Dimerization of SARS-CoV-2 Main Protease. J.Mol.Biol. (2024)

Release Date

2024-05-29

Peptides

3C-like proteinase nsp5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C-like proteinase nsp5

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