SMTL ID : 8v9b.1

Lipoprotein(a) Kringle IV domain 7 - Lp(a) KIV7 in complex with LY3441732

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.70, T.88 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.70, A:T.88, A:T.88 Salt bridges: A:R.70 SO4.2: 8 residues within 4Å: Chain A: P.42, H.43, W.44, R.81 Chain B: P.42, H.43, W.44, R.81 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:W.44, B:R.81, A:W.44, A:R.81 Water bridges: A:P.42, A:H.43, A:H.43, A:H.43 SO4.5: 2 residues within 4Å: Chain B: R.70, T.88 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.88 Salt bridges: B:R.70

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x 01: (2S,2'S)-3,3'-[carbonylbis(azanediyl-3,1-phenylene)]bis{2-[(3R)-pyrrolidin-1-ium-3-yl]propanoate}

01.4: 18 residues within 4Å: Chain A: W.44, Q.46, R.47, D.66, E.68, W.72, Y.74, R.81, W.82 Chain B: W.44, Q.46, R.47, D.66, E.68, W.72, Y.74, R.81, W.82 16 PLIP interactions: 7 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:W.72, B:W.72 Hydrogen bonds: A:E.68, B:E.68, B:E.68, B:Y.74 Water bridges: A:R.47, A:R.47, A:Y.74, B:R.47, B:R.47, B:Y.74 Salt bridges: A:R.47, A:R.81, B:R.47, B:R.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diaz, N. et al., Discovery of potent small-molecule inhibitors of lipoprotein(a) formation. Nature (2024)

Release Date

2024-05-08

Peptides

Apolipoprotein(a): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Apolipoprotein(a)