SMTL ID : 8va1.1

S. aureus TarL H300N in complex with CDP-ribitol (single tetramer)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x V2V: CDP-ribitol(Non-covalent)

V2V.1: 20 residues within 4Å: Chain A: W.299, N.300, A.301, G.303, F.305, K.306, V.308, Y.343, R.361, A.394, F.397, K.431, M.432, H.433, P.434, V.459, S.474, S.475, E.479, R.501 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:F.305, A:K.306, A:R.361, A:R.361, A:A.394, A:S.474, A:S.475, A:E.479, A:E.479, A:R.501 Salt bridges: A:K.306, A:K.306, A:H.433, A:H.433 pi-Cation interactions: A:H.433 V2V.2: 17 residues within 4Å: Chain B: W.299, A.301, G.303, F.305, K.306, V.308, Y.343, A.394, P.395, K.431, H.433, E.458, V.459, S.474, S.475, L.476, E.479 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:W.299, B:F.305, B:K.306, B:K.306, B:R.361, B:K.431, B:K.431, B:H.433, B:S.475, B:S.475, B:S.475 Salt bridges: B:K.306 pi-Cation interactions: B:H.433 V2V.3: 23 residues within 4Å: Chain C: W.299, N.300, A.301, G.303, A.304, F.305, K.306, V.308, Y.343, R.361, A.394, P.395, T.396, F.397, K.431, M.432, H.433, P.434, V.459, S.474, S.475, L.476, E.479 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:F.305, C:K.306, C:R.361, C:R.361, C:A.394, C:S.474, C:S.475 Salt bridges: C:K.306, C:K.306, C:H.433, C:H.433 pi-Stacking: C:H.433 V2V.4: 19 residues within 4Å: Chain D: W.299, A.301, G.303, F.305, K.306, V.308, Y.343, R.361, A.394, P.395, F.397, K.431, H.433, P.434, V.459, S.474, S.475, L.476, E.479 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:F.305, D:K.306, D:K.306, D:R.361, D:A.394, D:K.431, D:S.475, D:E.479 Salt bridges: D:K.306, D:K.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, F.K.K. et al., Cryo-EM analysis of S. aureus TarL, a polymerase in wall teichoic acid biogenesis central to virulence and antibiotic resistance. Sci Adv (2024)

Release Date

2024-04-03

Peptides

Teichoic acid ribitol-phosphate polymerase TarL: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Teichoic acid ribitol-phosphate polymerase TarL