- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-3-1-2-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)
BEF.2: 11 residues within 4Å:- Chain B: T.49, R.50, G.51, K.54, E.130, T.160, R.218
- Chain C: T.168, R.172
- Ligands: ADP.1, MG.3
No protein-ligand interaction detected (PLIP)BEF.8: 9 residues within 4Å:- Chain C: R.50, G.51, K.54, T.55, R.218
- Chain D: T.168, R.172
- Ligands: ADP.5, MG.6
No protein-ligand interaction detected (PLIP)BEF.10: 10 residues within 4Å:- Chain D: T.49, R.50, G.51, K.54, T.160, R.218
- Chain E: T.157, R.161
- Ligands: ADP.9, MG.11
No protein-ligand interaction detected (PLIP)- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain B: T.55, D.129
- Ligands: ADP.1, BEF.2
No protein-ligand interaction detected (PLIP)MG.6: 3 residues within 4Å:- Chain C: T.55
- Ligands: ADP.5, BEF.8
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.55
MG.11: 4 residues within 4Å:- Chain D: T.55, D.129
- Ligands: ADP.9, BEF.10
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:T.55
- 4 x ZN: ZINC ION(Non-covalent)
ZN.4: 5 residues within 4Å:- Chain B: C.67, P.75, C.76, C.79, C.82
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.67, B:C.76, B:C.79, B:C.82
ZN.7: 6 residues within 4Å:- Chain C: C.67, E.68, G.77, V.78, C.79, C.82
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:C.79, C:C.82
ZN.12: 4 residues within 4Å:- Chain D: C.67, C.76, C.79, C.82
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.67, D:C.76, D:C.79, D:C.82
ZN.13: 4 residues within 4Å:- Chain E: C.53, C.62, C.65, C.68
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:C.53, E:C.62, E:C.65, E:C.68
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Landeck, J.T. et al., Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem. (2024)
- Release Date
- 2024-03-27
- Peptides
- DNA polymerase III subunit delta: A
DNA polymerase III subunit tau: BCD
DNA polymerase III subunit delta': E
Beta sliding clamp: FG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-3-1-2-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Landeck, J.T. et al., Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem. (2024)
- Release Date
- 2024-03-27
- Peptides
- DNA polymerase III subunit delta: A
DNA polymerase III subunit tau: BCD
DNA polymerase III subunit delta': E
Beta sliding clamp: FG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G