SMTL ID : 8vba.1

The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1C08

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

39 x BGC: beta-D-glucopyranose(Post Translational Modification)

BGC.1: 7 residues within 4Å: Chain A: G.347, S.348, N.349 Chain B: Y.121, A.122, E.124 Chain C: Y.68 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.122, A:G.347 BGC.2: 2 residues within 4Å: Chain A: N.290, S.292 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.47, B:T.47, A:S.292 BGC.3: 4 residues within 4Å: Chain A: N.500, R.501, N.504 Chain C: S.79 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.79, C:S.79, A:R.501 BGC.4: 6 residues within 4Å: Chain A: N.466, N.495, N.499, A.529, A.530, N.532 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.499, A:A.530, A:N.532 BGC.5: 2 residues within 4Å: Chain A: N.528 Ligands: BGC.14 No protein-ligand interaction detected (PLIP) BGC.6: 5 residues within 4Å: Chain A: N.565, T.592, G.594, T.595, T.596 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.595, A:T.595 BGC.7: 5 residues within 4Å: Chain A: N.581, N.583, N.608, T.609, T.610 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.581, A:N.583, A:T.610 BGC.8: 2 residues within 4Å: Chain A: N.612, S.614 No protein-ligand interaction detected (PLIP) BGC.9: 5 residues within 4Å: Chain A: N.617, S.640, N.641, N.666 Ligands: BGC.11 No protein-ligand interaction detected (PLIP) BGC.10: 4 residues within 4Å: Chain A: L.630, N.652, N.655, T.657 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.657 BGC.11: 5 residues within 4Å: Chain A: N.666, N.667, N.692 Ligands: BGC.9, BGC.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.666, A:N.692 BGC.12: 7 residues within 4Å: Chain A: N.666, N.667, S.691, N.692, N.720 Ligands: BGC.11, BGC.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.666, A:S.691, A:N.692 BGC.13: 5 residues within 4Å: Chain A: N.720, G.739, N.740, N.761 Ligands: BGC.33 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.720 BGC.14: 4 residues within 4Å: Chain A: N.528, N.552, N.553 Ligands: BGC.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.553 BGC.15: 4 residues within 4Å: Chain A: K.732, S.753, N.754, K.779 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.732, A:S.753, A:K.779 BGC.16: 4 residues within 4Å: Chain A: S.842, N.843, N.868, D.869 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.842, A:N.843, A:N.868 BGC.17: 6 residues within 4Å: Chain A: N.894, S.919, N.920, N.948 Ligands: BGC.22, BGC.24 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.948 BGC.18: 2 residues within 4Å: Chain A: Q.953, N.972 No protein-ligand interaction detected (PLIP) BGC.19: 4 residues within 4Å: Chain A: T.645, N.647, T.671, S.673 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.673 BGC.20: 4 residues within 4Å: Chain A: T.659, G.684, N.685, T.711 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.685, A:N.685 BGC.21: 2 residues within 4Å: Chain A: N.717, T.737 No protein-ligand interaction detected (PLIP) BGC.22: 3 residues within 4Å: Chain A: N.894, N.895 Ligands: BGC.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.894 BGC.23: 2 residues within 4Å: Chain A: N.945, T.947 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.947 BGC.24: 4 residues within 4Å: Chain A: N.949, N.968 Ligands: BGC.17, BGC.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.968 BGC.25: 4 residues within 4Å: Chain A: N.949, N.968, N.989 Ligands: BGC.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.948, A:N.989 BGC.26: 6 residues within 4Å: Chain A: N.906, N.909, N.931, N.934, T.936, D.937 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.931, A:D.937 BGC.27: 6 residues within 4Å: Chain A: A.520, Q.521, G.522, N.524, N.548 Ligands: BGC.28 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.520, A:A.520 BGC.28: 6 residues within 4Å: Chain A: N.524, G.547, N.548, G.574, S.575 Ligands: BGC.27 No protein-ligand interaction detected (PLIP) BGC.29: 3 residues within 4Å: Chain A: N.607, N.608, G.633 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.607 BGC.30: 3 residues within 4Å: Chain A: N.823, T.847, N.849 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.823 BGC.31: 3 residues within 4Å: Chain A: N.603, S.605, T.625 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.625 BGC.32: 2 residues within 4Å: Chain A: N.540, N.563 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.563 BGC.33: 5 residues within 4Å: Chain A: N.720, N.721, N.740 Ligands: BGC.12, BGC.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.720 BGC.34: 3 residues within 4Å: Chain A: Q.725, N.744, A.766 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.725 BGC.35: 3 residues within 4Å: Chain A: N.793, T.795, N.823 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.795, A:N.823 BGC.36: 2 residues within 4Å: Chain A: T.1019, N.1021 No protein-ligand interaction detected (PLIP) BGC.37: 5 residues within 4Å: Chain A: N.754, D.780, A.781, R.782, N.808 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.780, A:R.782, A:R.782 BGC.38: 7 residues within 4Å: Chain A: N.854, N.880, N.883, T.885, N.909, K.911 Ligands: BGC.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.880, A:N.909 BGC.39: 6 residues within 4Å: Chain A: N.854, N.857, T.859, N.883, T.885 Ligands: BGC.38 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.854, A:N.883, A:T.885, A:T.885

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Berndsen, Z.T. et al., Structure and Antigenicity of the Secreted Glycoprotein Adhesin EtpA of Enterotoxigenic Escherichia coli. To Be Published

Release Date

2024-09-11

Peptides

EtpA: A
mAb 1C08 Heavy Chain: B
mAb 1C08 Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

EtpA

mAb 1C08 Heavy Chain

mAb 1C08 Light Chain

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