SMTL ID : 8vbo.1

Structure of bovine anti-HIV Fab ElsE9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL

GOL.1: 11 residues within 4Å: Chain A: S.141, D.142, Q.171, S.172, N.173 Chain B: G.211, V.212, H.213, V.230, V.231, T.232 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.211 GOL.2: 6 residues within 4Å: Chain B: K.166, G.167, P.168, S.169, T.254, V.256 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.166

3 x SO4: SULFATE ION

SO4.3: 7 residues within 4Å: Chain B: P.14, T.87, V.160, S.161, S.162, A.163 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.162, B:S.162, B:A.163 SO4.4: 7 residues within 4Å: Chain B: L.90, T.159, V.160, S.161, F.195, Y.225 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.225 SO4.5: 5 residues within 4Å: Chain B: P.41, L.90, L.157, E.197, Y.225 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.225 Water bridges: B:T.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Altman, P.X. et al., Immunization of cows with HIV envelope trimers generates broadly neutralizing antibodies to the V2-apex from the ultralong CDRH3 repertoire. Plos Pathog. (2024)

Release Date

2024-09-04

Peptides

Bovine Fab ElsE9 light chain: A
Bovine Fab ElsE9 heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Bovine Fab ElsE9 light chain

Bovine Fab ElsE9 heavy chain

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