SMTL ID : 8vc5.1

Crystal structure of glutamyl-tRNA synthetase GluRS from Pseudomonas aeruginosa (Zinc bound)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 10 residues within 4Å: Chain A: R.15, I.16, A.17, P.18, T.28, I.31, R.221, G.222, E.224, W.225 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.17, A:A.17, A:G.222, A:E.224, A:W.225 Water bridges: A:S.19 Salt bridges: A:R.15, A:R.221, A:R.221 FLC.6: 11 residues within 4Å: Chain B: R.15, I.16, A.17, P.18, T.28, I.31, Y.203, R.221, G.222, E.224, W.225 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.17, B:G.222, B:E.224, B:W.225 Salt bridges: B:R.15, B:R.221, B:R.221

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: T.270, E.273, R.274 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.273 Water bridges: A:A.468 SO4.3: 7 residues within 4Å: Chain A: K.262, P.266, S.268, F.271, D.469, R.472, Y.473 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.472 Water bridges: A:S.268, A:R.472, A:R.476 Salt bridges: A:K.262 SO4.7: 7 residues within 4Å: Chain B: K.262, P.266, S.268, F.271, D.469, R.472, Y.473 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.268, B:R.472 Water bridges: B:S.268, B:E.414, B:E.414 Salt bridges: B:K.262

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: C.115, F.116, C.117, Y.138, C.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.115, A:C.117, A:Y.138, A:C.142 ZN.9: 5 residues within 4Å: Chain B: C.115, F.116, C.117, Y.138, C.142 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.115, B:C.117, B:Y.138, B:C.142

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.5: 17 residues within 4Å: Chain A: A.343, Q.347, L.351, L.356, M.357, I.359, A.360, I.373, A.377, F.381 Chain B: A.343, V.346, Q.347, L.356, M.357, A.360, I.373 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain B: R.15, Y.203, F.204, N.207, R.221, W.225 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.15, B:R.15, B:Y.203, B:N.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seibold, S. et al., Crystal structure of glutamyl-tRNA synthetase GluRS from Pseudomonas aeruginosa (Zinc bound). To be published

Release Date

2023-12-27

Peptides

Glutamate--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate--tRNA ligase

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