SMTL ID : 8vck.1

Galactose-binding lectin from Mytilus californianus, Isoform 1 (rMcL-1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: E.77, H.110, P.111, K.112, G.113, G.114, V.125, H.127, H.131 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.110, A:P.111, A:G.113, A:H.131 Water bridges: A:H.131 GOL.2: 9 residues within 4Å: Chain A: H.18, P.19, K.20, G.21, G.22, V.33, H.35, H.39, E.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.18, A:P.19, A:G.21, A:H.39 GOL.3: 10 residues within 4Å: Chain A: D.29, H.66, P.67, L.68, G.69, G.70, V.81, H.83, D.85, H.87 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.67, A:G.69, A:H.87 Water bridges: A:G.69, A:R.89, A:R.89 GOL.6: 9 residues within 4Å: Chain B: E.77, H.110, P.111, K.112, G.113, G.114, V.125, H.127, H.131 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.111, B:G.113, B:H.131 Water bridges: B:G.113 GOL.7: 9 residues within 4Å: Chain B: H.18, P.19, K.20, G.21, G.22, V.33, H.35, H.39, E.121 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.19, B:G.21, B:H.39 GOL.8: 8 residues within 4Å: Chain B: D.29, H.66, L.68, G.69, G.70, H.83, D.85, H.87 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.29, B:G.69, B:D.85 GOL.9: 3 residues within 4Å: Chain A: R.147 Chain B: R.52, W.53 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:D.99, A:R.147, A:R.147, B:R.52, B:W.53 GOL.10: 2 residues within 4Å: Chain B: K.11, R.147 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.11, B:R.147

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 2 residues within 4Å: Chain A: H.87, R.89 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.89 Salt bridges: A:H.87, A:R.89

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 2 residues within 4Å: Chain A: N.28, H.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.28 Water bridges: A:N.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loera-Rubalcava, J. et al., A mytilectin from Mytilus californianus: Study of its unique galactoside interactions, oligomerization patterns, and antifungal activity. Int.J.Biol.Macromol. (2025)

Release Date

2024-12-18

Peptides

Galactose-binding lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galactose-binding lectin

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