SMTL ID : 8vev.1 (2 other biounits)

Structure of a mouse IgG antibody antigen-binding fragment (Fab) targeting N6-methyladenosine (m6A), an RNA modification, m6A nucleoside ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.06 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: P.123, P.124, S.125, V.126, T.209, V.211 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.126

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain B: P.61, R.63, Q.81, D.83 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.81, B:D.83 Salt bridges: B:R.63 SO4.3: 4 residues within 4Å: Chain B: L.128, W.188, E.189, R.211 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.188 Salt bridges: B:R.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aoki, S.T., Structure of a mouse IgG antibody antigen-binding fragment (Fab) targeting N6-methyladenosine (m6A), an RNA modification, m6A nucleoside ligand. To Be Published

Release Date

2024-02-07

Peptides

N6-methyladenosine (m6A) binding IgG Fab, heavy chain: A
N6-methyladenosine (m6A) binding IgG Fab, light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N6-methyladenosine (m6A) binding IgG Fab, heavy chain

N6-methyladenosine (m6A) binding IgG Fab, light chain

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