SMTL ID : 8vfk.1

Crystal Structure of Delta 109-117 D-Dopachrome Tautomerase (D-DT)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-trimer

Ligands

2 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 6 residues within 4Å: Chain A: P.1, K.32, R.36, S.63, I.64, I.107 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.107 Hydrogen bonds: A:P.1, A:P.1, A:P.1, A:I.64 Salt bridges: A:K.32, A:K.32, A:R.36 FLC.3: 5 residues within 4Å: Chain C: P.1, K.32, R.36, S.63, I.64 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:P.1, C:P.1, C:I.64 Water bridges: C:S.63 Salt bridges: C:K.32, C:K.32

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: G.65, V.66, V.67, G.68, D.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.65, A:G.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parkins, A. et al., The C-terminal Region of D-DT Regulates Molecular Recognition for Protein-Ligand Complexes. J.Med.Chem. (2024)

Release Date

2024-05-01

Peptides

D-dopachrome decarboxylase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D-dopachrome decarboxylase