SMTL ID : 8vfo.1

Crystal Structure of L117G Variant of D-Dopachrome Tautomerase (D-DT)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-trimer

Ligands

3 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 7 residues within 4Å: Chain A: P.1, K.32, R.36, S.63, I.64, I.107, K.109 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.107 Hydrogen bonds: A:I.64 Water bridges: A:R.36 Salt bridges: A:K.32, A:K.32, A:K.109 CIT.2: 7 residues within 4Å: Chain B: P.1, K.32, R.36, S.63, I.64, I.107, K.109 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.107 Hydrogen bonds: B:I.64 Water bridges: B:R.36 Salt bridges: B:K.32, B:K.32, B:K.109 CIT.3: 7 residues within 4Å: Chain C: P.1, K.32, R.36, S.63, I.64, I.107, K.109 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.107 Hydrogen bonds: C:I.64 Water bridges: C:R.36 Salt bridges: C:K.32, C:K.32, C:K.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parkins, A. et al., The C-terminal Region of D-DT Regulates Molecular Recognition for Protein-Ligand Complexes. J.Med.Chem. (2024)

Release Date

2024-05-01

Peptides

D-dopachrome decarboxylase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D-dopachrome decarboxylase