SMTL ID : 8vgd.1

Complex of ExbD with D-box peptide: Tetragonal form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

1 x GLN- PRO- ILE- SER- VAL- THR- MET- VAL- THR: GLN-PRO-ILE-SER-VAL-THR-MET-VAL-THR(Non-covalent)

GLN-PRO-ILE-SER-VAL-THR-MET-VAL-THR.1: 20 residues within 4Å: Chain A: F.45, M.58, M.61, D.62, H.65, Q.66, I.72, G.73, L.74, V.75 Chain B: F.45, M.58, M.61, D.62, H.65, Q.66, I.72, G.73, L.74, V.75 18 PLIP interactions: 9 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:F.45, A:I.72, A:I.72, A:L.74, B:F.45, B:L.74 Hydrogen bonds: A:H.65, A:I.72, A:L.74, A:L.74, B:I.72, B:L.74, B:L.74 Water bridges: A:I.72, B:H.65, B:H.65, B:I.72, B:I.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loll, P.J. et al., Discovery and structural characterization of the D-box, a conserved TonB motif that couples an inner-membrane motor to outer-membrane transport. J.Biol.Chem. (2024)

Release Date

2024-02-14

Peptides

Biopolymer transport protein ExbD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Biopolymer transport protein ExbD

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