SMTL ID : 8vgt.1

Structure of the HKU1 RBD bound to the human TMPRSS2 receptor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain B: N.123, Y.136 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: F.166, N.167 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain A: N.183 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.183 NAG.4: 2 residues within 4Å: Chain A: F.49, N.146 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.49 Hydrogen bonds: A:N.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCallum, M. et al., Human coronavirus HKU1 recognition of the TMPRSS2 host receptor. Cell (2024)

Release Date

2024-03-06

Peptides

Spike protein S1: A
Transmembrane protease serine 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spike protein S1

Transmembrane protease serine 2