SMTL ID : 8viy.1

15-Lipoxygenase-2 V427L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 7 residues within 4Å: Chain A: H.393, H.398, H.573, S.577, V.694, I.696 Ligands: C8E.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.393, A:H.398, A:H.573, H2O.1, H2O.2

2 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.2: 27 residues within 4Å: Chain A: F.204, F.385, E.389, H.393, L.394, H.398, I.432, N.433, L.435, A.436, L.439, L.440, V.446, L.447, R.449, T.451, F.458, Q.580, D.622, V.623, L.625, A.626, L.627, L.629, L.630, I.696 Ligands: FE2.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.440, A:A.626, A:L.629, A:L.630 C8E.3: 5 residues within 4Å: Chain A: L.206, G.209, S.210, A.213, E.214 No protein-ligand interaction detected (PLIP)

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: K.91, L.130, E.131, G.132, A.133, G.134, T.135, L.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.131, A:G.134, A:T.135 GOL.5: 3 residues within 4Å: Chain A: S.662, A.665, R.669 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.669 GOL.6: 2 residues within 4Å: Chain A: Q.499, R.663 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.499, A:R.663 GOL.7: 2 residues within 4Å: Chain A: D.369, K.370 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.370 GOL.8: 2 residues within 4Å: Chain A: I.514, Y.515 No protein-ligand interaction detected (PLIP) GOL.9: 1 residues within 4Å: Chain A: R.555 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.555 Salt bridges: A:R.555 GOL.10: 10 residues within 4Å: Chain A: Y.127, Q.128, R.165, Y.169, N.193, I.194, L.409, H.414, F.419, I.423 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.128, A:R.165, A:R.165, A:Y.169, A:Y.169, A:H.414 GOL.11: 4 residues within 4Å: Chain A: R.228, S.229, N.231, E.232 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.229 GOL.12: 10 residues within 4Å: Chain A: I.423, P.424, R.427, R.638, T.642, Y.643, P.644, D.645, H.647, N.692 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.423, A:R.638, A:T.642, A:D.645, A:D.645, A:N.692

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 2 residues within 4Å: Chain A: Q.666, R.669 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.666 Salt bridges: A:R.669 SO4.14: 3 residues within 4Å: Chain A: R.25, R.27, H.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.121 Salt bridges: A:R.25, A:R.27 SO4.15: 7 residues within 4Å: Chain A: S.197, K.200, R.427, Y.428, G.635, D.636, R.638 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.197, A:S.197, A:Y.428, A:D.636 Salt bridges: A:K.200, A:R.427 SO4.16: 3 residues within 4Å: Chain A: K.370, W.371, C.607 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.371 Water bridges: A:C.607 Salt bridges: A:K.370 SO4.17: 3 residues within 4Å: Chain A: T.296, S.297, A.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.297 SO4.18: 8 residues within 4Å: Chain A: S.316, G.317, A.331, A.332, L.353, S.354, Q.355, T.356 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.316, A:S.316, A:G.317, A:A.332, A:S.354, A:Q.355 SO4.19: 6 residues within 4Å: Chain A: G.31, E.32, A.33, F.108, R.110, R.638 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.32, A:A.33, A:R.638 SO4.20: 4 residues within 4Å: Chain A: Q.253, E.254, D.255, A.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.255 Water bridges: A:A.256 SO4.21: 4 residues within 4Å: Chain A: T.649, E.650, E.651, A.652 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.649, A:E.651 SO4.22: 3 residues within 4Å: Chain A: K.218, R.235, N.238 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.218, A:R.235 SO4.23: 5 residues within 4Å: Chain A: P.357, G.358, P.359, N.360, S.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.360, A:N.360 SO4.24: 6 residues within 4Å: Chain A: P.489, G.490, Y.491, Y.492, R.494, D.495 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.490, A:Y.491, A:R.494 SO4.25: 9 residues within 4Å: Chain A: H.573, A.574, S.577, A.578, S.631, E.633, L.689, E.691, I.696 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.577, A:S.577, A:L.689, A:E.691 Water bridges: A:H.573, A:A.574 Salt bridges: A:H.573

2 x CA: CALCIUM ION(Non-covalent)

CA.26: 5 residues within 4Å: Chain A: G.35, G.37, T.38, D.105, A.106 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.35, A:G.37, A:D.105, A:A.106, H2O.6 CA.27: 5 residues within 4Å: Chain A: D.59, G.62, K.63, E.64, F.65 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.59, A:G.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohler, A. et al., Identification of the Thermal Activation Network in Human 15-Lipoxygenase-2: Divergence from Plant Orthologs and Its Relationship to Hydrogen Tunneling Activation Barriers. Acs Catalysis (2024)

Release Date

2024-12-11

Peptides

Polyunsaturated fatty acid lipoxygenase ALOX15B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polyunsaturated fatty acid lipoxygenase ALOX15B