SMTL ID : 8vj6.1

GluA2 bound to GYKI-52466 and Glutamate, Inhibited State 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 01: 4-[(5S,8R)-8-methyl-6,7,8,9-tetrahydro-2H,5H-[1,3]dioxolo[4,5-h][2,3]benzodiazepin-5-yl]aniline

01.1: 15 residues within 4Å: Chain A: S.501, S.507, F.508, D.510, P.511, Y.592, N.595, L.596, F.599, N.767, V.768 Chain B: T.760, S.761 Chain D: I.587, S.591 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.510, A:L.596, A:N.767 Hydrogen bonds: A:S.507, A:Y.592, A:Y.592, A:N.767, A:N.767 pi-Stacking: A:F.599 01.2: 15 residues within 4Å: Chain A: S.591 Chain B: K.500, S.501, P.503, S.507, D.510, P.511, Y.592, N.595, L.596, F.599, L.763, N.767, V.768 Chain C: S.761 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:P.503, B:D.510, B:P.511, B:L.596, B:L.763, B:N.767 Hydrogen bonds: B:N.767 pi-Stacking: B:F.599 01.3: 14 residues within 4Å: Chain B: I.587, S.591 Chain C: S.501, S.507, F.508, D.510, P.511, Y.592, N.595, L.596, F.599, N.767, V.768 Chain D: S.761 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:D.510, C:L.596, C:F.599, C:N.767 Hydrogen bonds: C:Y.592, C:Y.592, C:N.767, C:N.767 pi-Stacking: C:F.599 01.4: 16 residues within 4Å: Chain A: S.761 Chain C: S.591 Chain D: K.500, S.501, K.502, P.503, S.507, F.508, D.510, P.511, Y.592, L.596, F.599, L.763, N.767, V.768 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:P.503, D:D.510, D:P.511, D:L.596, D:F.599, D:L.763, D:N.767 Hydrogen bonds: D:N.767 pi-Stacking: D:F.599

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hale, W.D. et al., Allosteric competition and inhibition in AMPA receptors. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-06-05

Peptides

Isoform Flip of Glutamate receptor 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Isoform Flip of Glutamate receptor 2

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