SMTL ID : 8vke.1

SARS-CoV-2 spike omicron (BA.1) RBD ectodomain dimer-of-trimers in complex with SC27 Fabs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain C: F.356, F.360, N.361 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.360 NAG.2: 3 residues within 4Å: Chain F: F.356, F.360, N.361 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:F.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voss, W.N. et al., Hybrid immunity to SARS-CoV-2 arises from serological recall of IgG antibodies distinctly imprinted by infection or vaccination. Cell Rep Med (2024)

Release Date

2024-07-24

Peptides

SC27 Fab heavy chain: AD
SC27 Fab light chain: BE
Spike glycoprotein: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

D
A

B
L

E
B

C
R

F
C

SC27 Fab heavy chain

SC27 Fab light chain

Spike glycoprotein

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