SMTL ID : 8vlm.1 (1 other biounit)

Crystal structure of the yeast cytosine deaminase (yCD) E64V-M100W heterodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.67 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.84, C.113, C.116 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.84, A:C.113, A:C.116 ZN.2: 5 residues within 4Å: Chain B: H.82, E.84, C.111, C.114 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.82, B:C.111, B:C.114

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: D.177, I.178, G.179 Chain B: W.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.177 EDO.4: 8 residues within 4Å: Chain B: I.53, H.82, E.84, S.109, P.110, C.111, D.175 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.109, B:C.111, B:D.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Despres, P.C. et al., Compensatory mutations potentiate constructive neutral evolution by gene duplication. Science (2024)

Release Date

2024-08-21

Peptides

Cytosine deaminase: A
Cytosine deaminase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cytosine deaminase

Cytosine deaminase

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