SMTL ID : 8vme.1

Crystal structure of the GSK-3/Axin complex bound to a phosphorylated beta-catenin T41A peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE

ADP.1: 22 residues within 4Å: Chain A: G.39, N.40, G.41, S.42, F.43, G.44, V.46, A.59, K.61, V.86, L.108, D.109, Y.110, V.111, T.114, R.117, Q.161, N.162, L.164, D.176 Ligands: MG.2, MG.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.41, A:S.42, A:F.43, A:G.44, A:D.109, A:V.111, A:D.176 Water bridges: A:K.61, A:T.114, A:R.117, A:D.176, A:G.178 Salt bridges: A:K.61, A:K.61

2 x MG: MAGNESIUM ION

MG.2: 3 residues within 4Å: Chain A: N.162, D.176 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.176 MG.3: 4 residues within 4Å: Chain A: F.43, D.157, D.176 Ligands: ADP.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.176, A:D.176, H2O.1, H2O.4, H2O.5

6 x GOL: GLYCEROL

GOL.4: 8 residues within 4Å: Chain A: Y.32, T.35, Y.47, I.60, K.62, F.92, S.94, N.105 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.32, A:T.35, A:T.35, A:K.62, A:K.62, A:S.94, A:N.105 GOL.5: 6 residues within 4Å: Chain A: D.81, H.82, C.83, R.143, N.337, E.342 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.81, A:N.337, A:N.337 GOL.6: 7 residues within 4Å: Chain A: R.295, T.302, A.303, R.304, L.305, T.306, E.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.295, A:E.309 GOL.7: 1 residues within 4Å: Chain A: P.24 No protein-ligand interaction detected (PLIP) GOL.8: 5 residues within 4Å: Chain A: K.268, F.269, P.270, Q.271 Chain B: Q.22 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.268, A:Q.271 Water bridges: B:Q.22 GOL.9: 7 residues within 4Å: Chain A: A.119, R.120, S.123, E.225, G.229, Q.230, P.231 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.120, A:S.123, A:E.225, A:G.229 Water bridges: A:A.119, A:S.123

1 x NA: SODIUM ION

NA.10: 4 residues within 4Å: Chain A: V.118, Y.122, Y.133, Y.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.137, A:Y.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Enos, M.D. et al., Structural and functional effects of phosphopriming and scaffolding in the kinase GSK-3 beta. Sci.Signal. (2024)

Release Date

2024-08-28

Peptides

Glycogen synthase kinase-3 beta: A
Axin-1: B
Catenin beta-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Glycogen synthase kinase-3 beta

Axin-1

Catenin beta-1

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