SMTL ID : 8vmh.1

A structural study of selectivity mechanisms for JNK3 and p38 alpha with indazole scaffold probing compounds

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 18 residues within 4Å: Chain A: P.198, E.199, L.202, W.204, H.206, N.208, L.239, L.243, P.249, L.253, K.256, I.257, I.266, L.298, D.299, S.300, D.301, R.303 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.198, A:L.202, A:W.204, A:L.239, A:L.243 Hydrogen bonds: A:W.204, A:K.256, A:K.256, A:S.300, A:D.301 Water bridges: A:E.199, A:E.199 BOG.2: 15 residues within 4Å: Chain A: L.81, L.82, M.85, V.90, I.148, I.153, I.154, H.155, R.156, D.157, I.173, L.174, D.175, F.176, R.196 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.81, A:V.90, A:I.148 Hydrogen bonds: A:I.154, A:R.156

1 x 01: (4P)-4-[6-fluoro-5-(2-methoxyanilino)-1H-indazol-1-yl]-5-methyl-N-(oxetan-3-yl)thiophene-2-carboxamide

01.3: 23 residues within 4Å: Chain A: V.37, V.45, A.47, R.56, A.58, V.59, K.60, E.78, L.82, I.91, L.111, T.113, H.114, L.115, M.116, G.117, A.118, D.119, A.164, L.174, D.175, F.176, L.178 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.37, A:K.60, A:L.82, A:T.113, A:A.164, A:L.174, A:L.174 Hydrogen bonds: A:R.56, A:R.56, A:M.116, A:M.116, A:F.176 pi-Cation interactions: A:K.60

Links

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Citation

Park, H. et al., A structural study of selectivity mechanisms for JNK3 and p38 alpha with indazole scaffold probing compounds. To Be Published

Release Date

2025-01-15

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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