SMTL ID : 8vof.1

GI targeted CpPI4K inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: methyl 2-chloro-5-(methyl{(8R)-3-[4-(methylcarbamoyl)phenyl]pyrazolo[1,5-a]pyridine-5-carbonyl}amino)benzoate

01.1: 18 residues within 4Å: Chain A: Y.219, P.226, L.228, I.292, K.294, L.299, E.302, Y.328, I.340, E.341, Y.342, V.343, A.346, V.347, S.348, L.408, I.418, D.419 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.328, A:I.340, A:Y.342, A:L.408, A:I.418 Hydrogen bonds: A:K.294, A:E.302, A:E.302, A:V.343, A:S.348 pi-Stacking: A:Y.219

1 x SO4: SULFATE ION

SO4.2: 3 residues within 4Å: Chain A: H.350, K.353, N.404 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.404 Salt bridges: A:H.350

1 x GDP: GUANOSINE-5'-DIPHOSPHATE

GDP.3: 21 residues within 4Å: Chain A: G.39 Chain B: S.20, G.21, V.22, G.23, K.24, S.25, N.26, F.36, N.37, L.38, S.40, K.41, D.66, N.124, K.125, D.127, L.128, S.154, A.155, L.156 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:D.19, B:G.21, B:V.22, B:G.23, B:K.24, B:S.25, B:S.25, B:N.26, B:N.26, B:N.37, B:S.40, B:S.40, B:D.66, B:N.124, B:K.125, B:A.155, B:L.156 Salt bridges: B:K.24, B:D.127 pi-Stacking: B:F.36 pi-Cation interactions: B:K.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manjunatha, U.H. et al., Cryptosporidium PI(4)K inhibitor EDI048 is a gut-restricted parasiticidal agent to treat paediatric enteric cryptosporidiosis. Nat Microbiol (2024)

Release Date

2024-09-04

Peptides

Isoform 2 of Phosphatidylinositol 4-kinase beta,Isoform 2 of Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta: A
Ras-related protein Rab-11A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isoform 2 of Phosphatidylinositol 4-kinase beta,Isoform 2 of Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta

Ras-related protein Rab-11A