SMTL ID : 8vp4.1

Crystal Structure of JF1cpCasp2 with Peptide Inhibitor AcVDVAD-CHO

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

homo-dimer

Ligands

2 x ACE- VAL- ASP- VAL- ALA- ASA: AcVDVAD-CHO(Non-covalent)

ACE-VAL-ASP-VAL-ALA-ASA.1: 18 residues within 4Å: Chain B: A.49, A.50, M.51, R.52, N.53, T.54, K.55, S.58, W.59, G.93, Y.94, A.95, F.100, R.168, H.226, G.227, Q.267, C.269 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:A.49, B:T.54, B:K.55, B:F.100 Hydrogen bonds: B:A.50, B:R.52, B:R.52, B:R.52, B:N.53, B:T.54, B:T.54, B:S.58, B:Y.94, B:Y.94, B:Y.94, B:H.226, B:G.227, B:Q.267, B:C.269 Water bridges: B:R.91, B:R.91, B:R.91, B:T.98 Salt bridges: B:R.52, B:R.91, B:R.168 ACE-VAL-ASP-VAL-ALA-ASA.2: 18 residues within 4Å: Chain A: A.49, A.50, M.51, R.52, N.53, T.54, K.55, S.58, W.59, G.93, Y.94, A.95, F.100, R.168, H.226, G.227, Q.267, C.269 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:A.49, A:T.54, A:K.55, A:F.100 Hydrogen bonds: A:A.50, A:R.52, A:R.52, A:R.52, A:R.52, A:N.53, A:T.54, A:T.54, A:S.58, A:Y.94, A:Y.94, A:G.227, A:C.269 Water bridges: A:R.91, A:R.91, A:R.91, A:R.91 Salt bridges: A:R.52, A:R.91, A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fuller, J.L. et al., Reengineering of Circularly Permuted Caspase-2 to Enhance Enzyme Stability and Enable Crystallographic Studies. Acs Chem.Biol. (2025)

Release Date

2025-04-09

Peptides

JF1cpCasp2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

JF1cpCasp2

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