- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.1: 3 residues within 4Å:- Chain A: N.64, L.269, Q.273
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.269
NAG-NAG.2: 2 residues within 4Å:- Chain A: N.148, Q.151
No protein-ligand interaction detected (PLIP)NAG-NAG.3: 3 residues within 4Å:- Chain A: N.445, H.448, F.450
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 1 residues within 4Å:- Chain A: N.481
No protein-ligand interaction detected (PLIP)NAG-NAG.5: 3 residues within 4Å:- Chain B: N.64, L.269, Q.273
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.269
NAG-NAG.6: 2 residues within 4Å:- Chain B: N.148, Q.151
No protein-ligand interaction detected (PLIP)NAG-NAG.7: 3 residues within 4Å:- Chain B: N.445, H.448, F.450
No protein-ligand interaction detected (PLIP)NAG-NAG.8: 1 residues within 4Å:- Chain B: N.481
No protein-ligand interaction detected (PLIP)NAG-NAG.9: 3 residues within 4Å:- Chain C: N.64, L.269, Q.273
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.269
NAG-NAG.10: 2 residues within 4Å:- Chain C: N.148, Q.151
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 3 residues within 4Å:- Chain C: N.445, H.448, F.450
No protein-ligand interaction detected (PLIP)NAG-NAG.12: 1 residues within 4Å:- Chain C: N.481
No protein-ligand interaction detected (PLIP)- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.13: 2 residues within 4Å:- Chain A: N.56, N.57
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:N.57
NAG.14: 4 residues within 4Å:- Chain A: E.419, K.420, N.421
- Chain B: Q.242
No protein-ligand interaction detected (PLIP)NAG.15: 2 residues within 4Å:- Chain B: N.56, N.57
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:N.57
NAG.16: 4 residues within 4Å:- Chain B: E.419, K.420, N.421
- Chain C: Q.242
No protein-ligand interaction detected (PLIP)NAG.17: 2 residues within 4Å:- Chain C: N.56, N.57
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:N.57
NAG.18: 4 residues within 4Å:- Chain A: Q.242
- Chain C: E.419, K.420, N.421
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, J. et al., A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines. Nat Commun (2024)
- Release Date
- 2024-07-24
- Peptides
- Spike protein S2: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, J. et al., A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines. Nat Commun (2024)
- Release Date
- 2024-07-24
- Peptides
- Spike protein S2: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C