SMTL ID : 8vqg.1

X-ray crystal structure of Can f 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-trimer

Ligands

3 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 7 residues within 4Å: Chain A: V.57, Y.71, R.75, V.77, S.92, M.103, K.105 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.92 Salt bridges: A:R.75, A:K.105, A:K.105 MLI.2: 6 residues within 4Å: Chain B: M.30, R.75, V.77, L.90, S.92, K.105 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.77, B:L.90 Hydrogen bonds: B:S.92 Salt bridges: B:R.75, B:K.105, B:K.105 MLI.3: 6 residues within 4Å: Chain C: Y.71, R.75, V.77, S.92, M.103, K.105 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:V.77 Hydrogen bonds: C:Y.71, C:Y.71, C:S.92 Water bridges: C:S.92, C:K.105 Salt bridges: C:R.75, C:K.105, C:K.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khatri, K. et al., X-ray crystal structure of natural Can f 1 in complex with human IgE 1J11 Fab. To Be Published

Release Date

2025-01-22

Peptides

Major allergen Can f 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Major allergen Can f 1