SMTL ID : 8vse.1

Cryo-EM structure of human CD45 extracellular region in complex with adenoviral protein E3/49K

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.355, A.356, S.357 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain A: N.411 Chain C: Q.43, I.44, R.45, H.57, N.59, Y.62 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain C: W.10, N.12, I.56, H.57 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.45 NAG-NAG.4: 5 residues within 4Å: Chain C: W.32, N.35, S.37, R.38, K.40 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain C: V.16, N.49, Q.51, N.52 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain C: G.105, N.107, L.151, F.152 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.7: 5 residues within 4Å: Chain C: E.138, F.139, N.140, N.154, T.156 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 6 residues within 4Å: Chain A: H.395, N.396, D.413 Chain C: W.9, W.10, P.86 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:H.395, C:P.86 Hydrogen bonds: A:N.396 NAG.9: 2 residues within 4Å: Chain A: Q.443, N.445 No protein-ligand interaction detected (PLIP) NAG.10: 4 residues within 4Å: Chain A: H.494, N.506, S.508, Y.530 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.508 NAG.11: 4 residues within 4Å: Chain B: H.435, V.442, Q.443, N.445 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.445 NAG.12: 3 residues within 4Å: Chain C: T.4, I.5, N.6 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borowska, M.T. et al., Orientation-dependent CD45 inhibition with viral and engineered ligands. Sci Immunol (2024)

Release Date

2024-11-06

Peptides

Receptor-type tyrosine-protein phosphatase C: AB
45.5kDa protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Receptor-type tyrosine-protein phosphatase C

45.5kDa protein