SMTL ID : 8vv8.1 (1 other biounit)

Crystal Structure of EHMT2 bound to EZM8266

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: M.137, G.138, W.139, S.173, Y.174, R.198, F.199, I.200, N.201, H.202, Y.243, F.247, F.255, T.256, C.257, Q.258 Ligands: 01.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.139, A:W.139, A:S.173, A:N.201, A:N.201, A:H.202, A:H.202, A:Q.258

1 x 01: (2R)-1-(azetidin-1-yl)-3-(2-methoxy-5-{[4-methyl-6-(methylamino)pyrimidin-2-yl]amino}phenoxy)propan-2-ol

01.2: 16 residues within 4Å: Chain A: Y.156, D.163, A.166, D.167, D.172, S.173, L.175, F.176, D.177, C.187, F.241, Y.243, R.246, F.247, K.251 Ligands: SAM.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:D.163, A:A.166, A:L.175, A:R.246 Hydrogen bonds: A:D.167, A:D.167, A:D.177 Water bridges: A:L.175, A:Y.243 pi-Cation interactions: A:Y.243, A:R.246

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: C.63, C.76, C.106, C.110 Ligands: ZN.4, ZN.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:C.76, A:C.106, A:C.110 ZN.4: 6 residues within 4Å: Chain A: C.69, C.106, C.112, C.116 Ligands: ZN.3, ZN.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.106, A:C.112, A:C.116 ZN.5: 7 residues within 4Å: Chain A: C.63, C.65, C.69, C.74, C.106 Ligands: ZN.3, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:C.65, A:C.69, A:C.74 ZN.6: 4 residues within 4Å: Chain A: C.204, C.257, C.259, C.264 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.204, A:C.257, A:C.259, A:C.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cocozaki, A. et al., Crystal Structure of EHMT2 bound to EZM8266. To Be Published

Release Date

2024-12-11

Peptides

Histone-lysine N-methyltransferase EHMT2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase EHMT2

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