SMTL ID : 8vxt.1

Cryo-EM structure of mammalian Thorase filament, 3-layer refinement

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 12 residues within 4Å: Chain A: I.53, A.54, P.95, G.96, C.97, G.98, K.99, T.100, L.101, N.198, I.228 Chain B: S.163 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.54, A:A.54, A:G.96, A:G.98, A:G.98, A:K.99, A:K.99, A:T.100, A:L.101, A:N.198, B:H.166 Salt bridges: A:K.99, A:K.99 AGS.2: 13 residues within 4Å: Chain A: S.163, H.166 Chain B: I.53, A.54, P.95, G.96, C.97, G.98, K.99, T.100, L.101, N.198, I.228 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:A.54, B:A.54, B:G.96, B:G.98, B:G.98, B:K.99, B:K.99, B:T.100, B:L.101, B:N.198 Salt bridges: B:K.99, B:K.99 AGS.3: 13 residues within 4Å: Chain C: I.53, A.54, P.95, G.96, C.97, G.98, K.99, T.100, L.101, N.198, I.228 Chain E: S.163, H.166 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:A.54, C:A.54, C:G.96, C:G.98, C:G.98, C:K.99, C:K.99, C:T.100, C:L.101, C:N.198 Salt bridges: C:K.99, C:K.99 AGS.4: 13 residues within 4Å: Chain D: I.53, A.54, P.95, G.96, C.97, G.98, K.99, T.100, L.101, N.198, I.228 Chain F: S.163, H.166 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:A.54, D:A.54, D:G.96, D:G.98, D:G.98, D:K.99, D:K.99, D:T.100, D:L.101, D:N.198 Salt bridges: D:K.99, D:K.99 AGS.5: 13 residues within 4Å: Chain C: S.163, H.166 Chain E: I.53, A.54, P.95, G.96, C.97, G.98, K.99, T.100, L.101, N.198, I.228 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:A.54, E:A.54, E:G.96, E:G.98, E:G.98, E:K.99, E:K.99, E:T.100, E:L.101, E:N.198 Salt bridges: E:K.99, E:K.99 AGS.6: 13 residues within 4Å: Chain D: S.163, H.166 Chain F: I.53, A.54, P.95, G.96, C.97, G.98, K.99, T.100, L.101, N.198, I.228 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:A.54, F:A.54, F:G.96, F:G.98, F:G.98, F:K.99, F:K.99, F:T.100, F:L.101, F:N.198 Salt bridges: F:K.99, F:K.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dar, M.A. et al., Cryo-EM Structure of AAA + ATPase Thorase Reveals Novel Helical Filament Formation. Biorxiv (2024)

Release Date

2024-12-11

Peptides

Outer mitochondrial transmembrane helix translocase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Outer mitochondrial transmembrane helix translocase