SMTL ID : 8vyg.1

SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain B: Y.50 Chain C: G.332, F.335, N.336, L.361 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:F.335, C:L.361 Hydrogen bonds: C:N.336, B:Y.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magaret, C.A. et al., Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features. Nat Commun (2024)

Release Date

2024-03-27

Peptides

S309 Heavy Chain: A
S309 Light Chain: B
Spike glycoprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
R

S309 Heavy Chain

S309 Light Chain

Spike glycoprotein

Related Entries With Identical Sequence