SMTL ID : 8w0t.1

Human LCAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 27 residues within 4Å: Chain A: I.140, A.141, M.142, T.143, G.148, S.149, F.173, I.174, S.175, V.377, I.380, Y.381, G.382, T.384, E.386, I.387, E.390 Chain B: R.287, F.290, L.297, T.299, Q.355, L.356, G.358, G.359 Chain D: Q.298, H.302 22 PLIP interactions: 17 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.173, A:V.377 Hydrogen bonds: A:I.140, A:M.142, A:T.143, A:T.143, A:G.148, A:S.149, A:S.149, A:S.175, A:G.382, A:T.384, A:T.384, A:E.386, A:E.390, A:E.390, B:Q.355, B:Q.355, B:G.359 Water bridges: A:D.150 Salt bridges: B:R.287, B:R.287 FAD.2: 28 residues within 4Å: Chain A: R.287, F.290, L.297, T.299, Q.355, L.356, G.358, G.359, Y.362 Chain B: I.140, A.141, M.142, T.143, A.147, G.148, S.149, F.173, I.174, S.175, K.220, V.377, I.380, Y.381, T.384, E.386, I.387, E.390 Chain C: Q.298 22 PLIP interactions: 1 interactions with chain C, 6 interactions with chain A, 15 interactions with chain B Hydrogen bonds: C:Q.298, A:R.287, A:Q.355, A:Q.355, A:G.359, B:I.140, B:M.142, B:T.143, B:T.143, B:S.149, B:S.175, B:G.382, B:T.384, B:E.390, B:E.390 Water bridges: A:T.299 Salt bridges: A:R.287 Hydrophobic interactions: B:F.173, B:F.173, B:K.220, B:V.377 pi-Stacking: B:Y.381 FAD.3: 30 residues within 4Å: Chain B: Q.298 Chain C: I.140, A.141, M.142, T.143, A.147, G.148, S.149, F.173, I.174, S.175, K.220, V.377, I.380, Y.381, G.382, G.383, T.384, E.386, I.387, E.390 Chain D: Y.283, R.287, F.290, L.297, T.299, Q.355, L.356, G.358, G.359 25 PLIP interactions: 18 interactions with chain C, 6 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: C:F.173, C:K.220, C:V.377 Hydrogen bonds: C:I.140, C:M.142, C:T.143, C:T.143, C:S.149, C:S.149, C:S.175, C:G.382, C:G.383, C:E.386, C:E.390, D:Y.283, D:R.287, D:T.299, D:Q.355, D:G.359, B:Q.298 Water bridges: C:E.144, C:D.150, C:T.384 pi-Stacking: C:Y.381 Salt bridges: D:R.287 FAD.4: 28 residues within 4Å: Chain A: Q.298 Chain C: R.287, F.290, V.294, L.297, T.299, Q.355, L.356, G.358, G.359 Chain D: I.140, M.142, T.143, G.148, S.149, F.173, I.174, S.175, K.220, T.228, V.377, I.380, Y.381, G.382, G.383, T.384, E.386, I.387 27 PLIP interactions: 4 interactions with chain C, 22 interactions with chain D, 1 interactions with chain A Hydrogen bonds: C:Q.355, C:G.359, D:I.140, D:M.142, D:T.143, D:T.143, D:S.149, D:S.149, D:S.175, D:G.382, D:G.383, D:T.384, D:T.384, D:E.386, D:E.390, D:E.390, A:Q.298 Salt bridges: C:R.287, C:R.287 Hydrophobic interactions: D:F.173, D:F.173, D:K.220, D:V.377, D:Y.381 Water bridges: D:D.150, D:D.150, D:T.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narayanan, B. et al., Structural basis for expanded substrate specificities of human long chain acyl-CoA dehydrogenase and related acyl-CoA dehydrogenases. Sci Rep (2024)

Release Date

2024-06-19

Peptides

Long-chain specific acyl-CoA dehydrogenase, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Long-chain specific acyl-CoA dehydrogenase, mitochondrial

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