SMTL ID : 8w13.1

Crystal structure of MYST acetyltransferase domain in complex with N-(1-(5-bromo-2-methoxyphenyl)-1H-1,2,3-triazol-4-yl)-2-methoxybenzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x 01: N-[(1M)-1-(5-bromo-2-methoxyphenyl)-1H-1,2,3-triazol-4-yl]-2-methoxybenzene-1-sulfonamide

01.1: 18 residues within 4Å: Chain A: F.99, L.100, I.146, M.147, I.148, Q.153, R.154, R.155, G.156, Y.157, G.158, R.159, I.162, S.183, L.185, G.186, L.188, S.189 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.185 Hydrogen bonds: A:R.154, A:G.156, A:G.158, A:R.159, A:S.189 Water bridges: A:R.155, A:R.155 Halogen bonds: A:F.99

9 x EDO: 1,2-ETHANEDIOL

EDO.2: 8 residues within 4Å: Chain A: H.102, S.144, C.145, E.179, K.180, P.181 Ligands: EDO.8, CL.16 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.181 EDO.3: 7 residues within 4Å: Chain A: Y.30, K.44, Y.45, I.87, N.91 Ligands: EDO.5, EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.30, A:N.91 Water bridges: A:Y.30, A:K.44 EDO.4: 3 residues within 4Å: Chain A: Y.48, E.49, K.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.49, A:K.50 Water bridges: A:E.49 EDO.5: 7 residues within 4Å: Chain A: Y.45, I.87, Q.90, N.91, L.94, F.107 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.45, A:Y.45, A:I.87 EDO.6: 7 residues within 4Å: Chain A: C.42, K.44, W.61, I.87, Y.88, N.91 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.42, A:N.91 EDO.7: 2 residues within 4Å: Chain A: D.121, R.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.121, A:R.122 EDO.8: 8 residues within 4Å: Chain A: H.102, S.144, C.145, I.146, P.181, L.182, S.183 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.144, A:I.146 Water bridges: A:S.183 EDO.9: 7 residues within 4Å: Chain A: I.13, G.14, Y.16, E.40, H.126, I.127, Y.152 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.40, A:H.126, A:I.127 Water bridges: A:I.127 EDO.10: 5 residues within 4Å: Chain A: W.61, Q.63, P.64, P.65 Ligands: CL.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.63

7 x CL: CHLORIDE ION

CL.11: 4 residues within 4Å: Chain A: L.105, Y.106, F.107, D.108 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: V.175, T.221, Q.222 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: I.18, D.19 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain A: S.183, D.184, L.185 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain A: V.8, D.9, K.10, Q.33, P.34, K.35 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain A: K.103, T.104, L.105, C.145 Ligands: EDO.2 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain A: W.61, R.62, Q.63 Ligands: EDO.10 Ligand excluded by PLIP

1 x ZN: ZINC ION

ZN.18: 4 residues within 4Å: Chain A: C.39, C.42, H.55, C.59 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.39, A:C.42, A:H.55, A:C.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C. et al., Identification of triazolyl KAT6 inhibitors via a templated fragment approach. Bioorg.Med.Chem.Lett. (2024)

Release Date

2024-09-11

Peptides

Histone acetyltransferase KAT8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase KAT8