SMTL ID : 8w14.1

Rhodanese-like domain from Acinetobacter baumannii 118362

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: V.63, I.83, K.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.106 GOL.2: 4 residues within 4Å: Chain A: R.98, K.101, E.102, S.105 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.98, A:E.102, A:S.105, A:S.105 Water bridges: A:E.102

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: C.117, R.118, S.119, N.121, R.122, R.155 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.119, A:S.119, A:N.121, A:N.121, A:R.122 Salt bridges: A:R.118, A:R.122, A:R.155 SO4.4: 6 residues within 4Å: Chain B: F.93, C.117, R.118, S.119, N.121, R.122 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.119, B:S.119, B:S.119, B:N.121, B:N.121, B:R.122 Water bridges: B:R.155, B:R.155 Salt bridges: B:R.118, B:R.122, B:R.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benisch, R. et al., Structural and biochemical characterization of an encapsulin-associated rhodanese from Acinetobacter baumannii. Protein Sci. (2024)

Release Date

2024-09-25

Peptides

Rhodanese: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rhodanese