SMTL ID : 8w1l.1

Structure of CSF1R kinase domain in complex with Cpd 32

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x 01: [3-({3-methoxy-4-[(6-methoxypyridin-3-yl)methoxy]phenyl}methyl)-3H-imidazo[4,5-b]pyridin-6-yl](2-oxa-6-azaspiro[3.3]heptan-6-yl)methanone

01.1: 18 residues within 4Å: Chain A: L.52, V.60, A.78, M.101, V.111, T.127, E.128, Y.129, C.130, C.131, G.133, L.180, H.187, N.194, L.196, G.206, D.207, F.208 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.111, A:T.127 Hydrogen bonds: A:C.130, A:D.207 Water bridges: A:D.207, A:D.207

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.138, D.165, F.169, G.200, H.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.165

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.140, N.219, N.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.219, A:N.265 Water bridges: A:R.140 Salt bridges: A:R.140 SO4.4: 2 residues within 4Å: Chain A: N.273, S.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.273, A:S.274, A:S.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kane Jr., J.L. et al., Identification of Selective Imidazopyridine CSF1R Inhibitors. Acs Med.Chem.Lett. (2024)

Release Date

2024-05-29

Peptides

Macrophage colony-stimulating factor 1 receptor,CSF1R: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage colony-stimulating factor 1 receptor,CSF1R