SMTL ID : 8w1o.1

Cryo-EM structure of BTV virion

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-10-1-1-mer

Ligands

1 x U- A- U- U- A- A- U: RNA-1(Non-covalent)

U-A-U-U-A-A-U.1: 21 residues within 4Å: Chain K: R.520, L.567, E.568, R.573, L.728, Q.814, M.828, R.835, K.837, S.848, T.852, K.1032, R.1037 Ligands: A-U-U-A-A-U-A-A.2, A-U-U-A-A-U-A-A.2, A-U-U-A-A-U-A-A.2, A-U-U-A-A-U-A-A.2, A-U-U-A-A-U-A-A.2, A-U-U-A-A-U-A-A.2, A-U-U-A-A-U-A-A.2, A-U-U-A-A-U-A-A.2 Protein-ligand interaction information (PLIP) not available

1 x A- U- U- A- A- U- A- A: RNA-2(Non-covalent)

A-U-U-A-A-U-A-A.2: 19 residues within 4Å: Chain K: T.448, S.449, R.512, I.522, E.568, A.569, G.571, R.1130, K.1195, G.1197, G.1200, M.1205 Ligands: U-A-U-U-A-A-U.1, U-A-U-U-A-A-U.1, U-A-U-U-A-A-U.1, U-A-U-U-A-A-U.1, U-A-U-U-A-A-U.1, U-A-U-U-A-A-U.1, U-A-U-U-A-A-U.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, X. et al., RNA genome packaging and capsid assembly of bluetongue virus visualized in host cells. Cell (2024)

Release Date

2024-04-24

Peptides

Core protein VP3: ABCDEFGHIJ
RNA-directed RNA polymerase: K
Outer capsid protein VP2: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
N

Core protein VP3

RNA-directed RNA polymerase

Outer capsid protein VP2

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