SMTL ID : 8w2c.1 (1 other biounit)

Thioesterase domain structure from Sulfazecin biosynthetic nonribosomal peptide synthetase SulM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: A.250, G.251, I.252 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain A: W.217, V.247, Y.249, R.266, A.267, S.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.270 Water bridges: A:Y.249 EDO.3: 5 residues within 4Å: Chain A: M.31, V.56, S.59, R.60 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.60, A:R.60 EDO.4: 5 residues within 4Å: Chain A: M.31, A.32, G.33, P.63 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.33 Water bridges: A:M.31 EDO.5: 5 residues within 4Å: Chain A: S.222, Y.230, E.248, A.250 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.248 EDO.6: 4 residues within 4Å: Chain A: P.231, L.246, E.248 Ligands: EDO.5 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 6 residues within 4Å: Chain A: N.47, Q.115, Y.255, L.256, L.257, R.258 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.257 Water bridges: A:N.47, A:N.47, A:Q.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, K.D. et al., The structure of the monobactam-producing thioesterase domain of SulM forms a unique complex with the upstream carrier protein domain. J.Biol.Chem. (2024)

Release Date

2024-08-07

Peptides

Non-ribosomal peptide synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-ribosomal peptide synthetase

Related Entries With Identical Sequence