SMTL ID : 8w2u.1

Cryo-EM structure of human tankyrase 2 SAM-PARP filament -apo state (consensus map).

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-20-mer

Ligands

20 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.232, A:H.235, A:C.240, A:C.243 ZN.2: 4 residues within 4Å: Chain B: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.232, B:H.235, B:C.240, B:C.243 ZN.3: 4 residues within 4Å: Chain C: C.232, H.235, C.240, C.243 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:C.232, C:H.235, C:H.235, C:C.240, C:C.243 ZN.4: 5 residues within 4Å: Chain D: C.232, V.234, H.235, C.240, C.243 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.232, D:H.235, D:C.240 ZN.5: 4 residues within 4Å: Chain E: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.232, E:H.235, E:C.240, E:C.243 ZN.6: 4 residues within 4Å: Chain F: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.232, F:H.235, F:C.240, F:C.243 ZN.7: 4 residues within 4Å: Chain G: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.232, G:H.235, G:C.240, G:C.243 ZN.8: 4 residues within 4Å: Chain H: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.232, H:H.235, H:C.240, H:C.243 ZN.9: 4 residues within 4Å: Chain I: C.232, H.235, C.240, C.243 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:C.232, I:H.235, I:H.235, I:C.240, I:C.243 ZN.10: 4 residues within 4Å: Chain J: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.232, J:H.235, J:C.240, J:C.243 ZN.11: 4 residues within 4Å: Chain K: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.232, K:H.235, K:C.240, K:C.243 ZN.12: 4 residues within 4Å: Chain L: C.232, H.235, C.240, C.243 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:C.232, L:H.235, L:H.235, L:C.240, L:C.243 ZN.13: 4 residues within 4Å: Chain M: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.232, M:H.235, M:C.240, M:C.243 ZN.14: 4 residues within 4Å: Chain N: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.232, N:H.235, N:C.240, N:C.243 ZN.15: 4 residues within 4Å: Chain O: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:C.232, O:H.235, O:C.240, O:C.243 ZN.16: 4 residues within 4Å: Chain P: C.232, H.235, C.240, C.243 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:C.232, P:H.235, P:H.235, P:C.240, P:C.243 ZN.17: 4 residues within 4Å: Chain Q: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:C.232, Q:H.235, Q:C.240, Q:C.243 ZN.18: 4 residues within 4Å: Chain R: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.232, R:H.235, R:C.240, R:C.243 ZN.19: 4 residues within 4Å: Chain S: C.232, H.235, C.240, C.243 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:C.232, S:H.235, S:H.235, S:C.240, S:C.243 ZN.20: 4 residues within 4Å: Chain T: C.232, H.235, C.240, C.243 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:C.232, T:H.235, T:C.240, T:C.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zimmerman, J. et al., A potent and selective TNKS2 inhibitor for tumor-selective WNT suppression. Biorxiv (2025)

Release Date

2025-07-09

Peptides

Poly [ADP-ribose] polymerase tankyrase-2: ABCDEFGHIJKLMNOPQRST

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
L

L
M

M
N

N
O

O
P

P
Q

Q
R

R
S

S
T

T
U

Poly [ADP-ribose] polymerase tankyrase-2

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