SMTL ID : 8w3d.1 (3 other biounits)

TAS-120 covalent structure with FGFR2 molecular brake mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x TZ0: 1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]prop-2-en-1-one(Covalent)

TZ0.1: 23 residues within 4Å: Chain A: L.43, G.44, E.45, G.46, C.47, F.48, V.51, A.71, K.73, E.90, M.94, I.104, V.118, V.120, E.121, Y.122, A.123, N.127, E.130, L.189, A.199, D.200, F.201 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.48, A:F.48, A:F.48, A:V.51, A:K.73, A:V.120, A:L.189, A:L.189 Hydrogen bonds: A:G.46, A:C.47, A:E.90, A:E.121, A:A.123, A:D.200 Water bridges: A:E.45, A:F.48

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: T.191, E.192, N.193, V.195, K.197 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.192, A:N.193, A:K.197, A:K.197

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.181, R.205, Y.212, K.214, N.218 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.212, A:N.218 Salt bridges: A:R.181, A:R.205 SO4.4: 3 residues within 4Å: Chain A: V.299, P.300, S.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.301, A:S.301 SO4.5: 1 residues within 4Å: Chain A: R.168 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goyal, L. et al., A Model for Decoding Resistance in Precision Oncology: Acquired Resistance to FGFR inhibitors in Cholangiocarcinoma. Ann Oncol (2024)

Release Date

2025-01-01

Peptides

Fibroblast growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 2

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