SMTL ID : 8w4v.1

Crystal structure of human HSP90 in complex with compound 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: MG.3 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Ligands: MG.1 No protein-ligand interaction detected (PLIP)

2 x Q9O: 4-[2-[(dimethylamino)methyl]phenyl]sulfanylbenzene-1,3-diol

Q9O.2: 13 residues within 4Å: Chain A: L.53, N.56, D.59, A.60, K.63, D.98, I.101, G.102, M.103, D.107, G.113, T.189, V.191 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.59, A:A.60, A:K.63 Hydrogen bonds: A:N.56, A:T.189 Water bridges: A:L.53, A:D.98, A:G.100 Salt bridges: A:D.107 Q9O.4: 13 residues within 4Å: Chain B: L.53, N.56, D.59, A.60, K.63, D.98, I.101, G.102, M.103, D.107, G.113, T.189, V.191 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:D.59, B:A.60, B:K.63 Hydrogen bonds: B:N.56, B:T.189 Water bridges: B:L.53, B:D.98, B:G.100 Salt bridges: B:D.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Accurate Characterization of Binding Kinetics and Allosteric Mechanisms for the HSP90 Chaperone Inhibitors Using AI-Augmented Integrative Biophysical Studies. Jacs Au (2024)

Release Date

2024-04-17

Peptides

Heat shock protein HSP 90-alpha: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Heat shock protein HSP 90-alpha

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