SMTL ID : 8w6g.1

NaDC1 with inhibitor ACA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x VIJ: 2-[[(~{E})-3-(4-pentylphenyl)prop-2-enoyl]amino]benzoic acid

VIJ.1: 6 residues within 4Å: Chain A: C.63, W.297, L.301, A.550, R.551, F.554 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.297, A:L.301, A:F.554, A:F.554 Salt bridges: A:R.551 VIJ.4: 6 residues within 4Å: Chain B: C.63, W.297, L.301, A.550, R.551, F.554 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.297, B:L.301, B:F.554, B:F.554 Salt bridges: B:R.551

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.2: 8 residues within 4Å: Chain A: L.38, Y.50, Y.53, L.57, L.79, M.82 Chain B: F.389, I.396 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.38, A:Y.53, A:L.57, A:L.79, B:F.389, B:I.396 Hydrogen bonds: A:Y.50 Y01.5: 7 residues within 4Å: Chain A: F.389, I.396 Chain B: Y.50, Y.53, L.57, L.79, M.82 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.53, B:L.57, B:L.79, A:F.389, A:I.396

2 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Non-covalent)

3PH.3: 12 residues within 4Å: Chain A: R.121, I.122, R.125, I.129, V.130, G.140, F.141, V.144, M.161, H.332, S.346, F.349 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:R.125, A:I.129, A:I.129, A:V.130, A:F.141, A:F.349 Hydrogen bonds: A:H.332 Salt bridges: A:R.121, A:R.125 3PH.6: 12 residues within 4Å: Chain B: R.121, I.122, R.125, I.129, V.130, G.140, F.141, V.144, M.161, H.332, S.346, F.349 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:R.125, B:I.129, B:I.129, B:V.130, B:F.141, B:F.349 Hydrogen bonds: B:H.332 Salt bridges: B:R.121, B:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chi, X. et al., Cryo-EM structures of the human NaS1 and NaDC1 transporters revealed the elevator transport and allosteric regulation mechanism. Sci Adv (2024)

Release Date

2024-04-17

Peptides

Solute carrier family 13 member 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Solute carrier family 13 member 2

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