SMTL ID : 8w6o.1

NaS1 in IN/IN state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: S.148, L.151, S.152, N.153, G.271 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.148 NA.2: 7 residues within 4Å: Chain A: T.498, A.501, S.502, N.503, A.539, A.545, N.546 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.498 NA.4: 5 residues within 4Å: Chain B: S.148, L.151, S.152, N.153, G.271 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.152 NA.5: 7 residues within 4Å: Chain B: T.498, A.501, S.502, N.503, A.539, A.545, N.546 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.501

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 10 residues within 4Å: Chain A: L.54, A.459, I.471, G.472, L.475, G.479, P.512, I.513, L.517, A.520 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.54, A:I.471, A:L.517, A:A.520 CLR.6: 9 residues within 4Å: Chain B: A.459, C.462, I.471, G.472, L.475, G.479, I.513, L.517, A.520 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.471, B:I.471, B:L.517, B:A.520

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chi, X. et al., Cryo-EM structures of the human NaS1 and NaDC1 transporters revealed the elevator transport and allosteric regulation mechanism. Sci Adv (2024)

Release Date

2024-04-17

Peptides

Solute carrier family 13 member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Solute carrier family 13 member 1

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