SMTL ID : 8w7d.1

Crystal structure of EcPPAT-FR901483 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-tetramer

Ligands

4 x 7TG: [(1S,3S,6S,7S,8R,9S)-6-[(4-methoxyphenyl)methyl]-3-(methylamino)-7-oxidanyl-5-azatricyclo[6.3.1.0^1,5]dodecan-9-yl] dihydrogen phosphate(Non-covalent)

7TG.1: 21 residues within 4Å: Chain A: F.255, Y.259, F.260, I.302, P.303, E.304, K.327, D.367, D.368, S.369, I.370, V.371, R.372, G.373, T.374, T.375, I.400, I.408, D.409, M.410, V.461 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.255, A:F.255, A:Y.259, A:V.371 Hydrogen bonds: A:V.371, A:R.372, A:G.373, A:T.374, A:T.375, A:T.375 Salt bridges: A:D.367, A:D.368, A:R.372 pi-Stacking: A:F.260 7TG.2: 21 residues within 4Å: Chain B: Y.75, F.255, Y.259, F.260, I.302, P.303, E.304, K.327, D.367, D.368, S.369, I.370, V.371, R.372, G.373, T.374, T.375, S.376, I.400, I.408, M.410 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.255, B:Y.259, B:F.260, B:V.371 Hydrogen bonds: B:D.368, B:V.371, B:R.372, B:G.373, B:T.374, B:T.375, B:T.375 Salt bridges: B:D.367, B:D.368 7TG.3: 21 residues within 4Å: Chain C: Y.75, F.255, Y.259, F.260, I.302, P.303, E.304, T.305, D.367, D.368, S.369, I.370, V.371, R.372, G.373, T.374, T.375, I.400, I.408, D.409, M.410 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:F.255, C:F.255, C:Y.259 Hydrogen bonds: C:V.371, C:R.372, C:G.373, C:T.374, C:T.375, C:T.375 Salt bridges: C:D.367, C:D.368, C:R.372 pi-Stacking: C:F.260 7TG.4: 20 residues within 4Å: Chain D: F.255, Y.259, F.260, I.302, P.303, E.304, K.327, D.367, D.368, S.369, I.370, V.371, R.372, G.373, T.374, T.375, I.400, I.408, D.409, M.410 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:F.255, D:F.255, D:Y.259, D:V.371 Hydrogen bonds: D:V.371, D:R.372, D:G.373, D:T.374, D:T.375, D:T.375, D:T.375 Salt bridges: D:D.367, D:D.368 pi-Stacking: D:F.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sato, M. et al., Uncommon Arrangement of Self-resistance Allows Biosynthesis of de novo Purine Biosynthesis Inhibitor that Acts as an Immunosuppressor. J.Am.Chem.Soc. (2023)

Release Date

2023-12-13

Peptides

Amidophosphoribosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Amidophosphoribosyltransferase