SMTL ID : 8w7r.1

H. walsbyi bacteriorhodopsin mutant - W94F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate

OLC.1: 13 residues within 4Å: Chain A: V.139, Y.143, W.146, I.151, V.154, L.204 Chain B: T.150, M.153, V.154, V.161, V.195, L.198 Ligands: 1PE.3 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:Y.143, A:Y.143, A:W.146, A:I.151, A:V.154, B:T.150, B:V.154, B:V.161, B:V.195, B:L.198 Hydrogen bonds: A:L.204 OLC.2: 2 residues within 4Å: Chain A: Y.210 Ligands: GOL.6 No protein-ligand interaction detected (PLIP) OLC.10: 10 residues within 4Å: Chain B: I.59, A.62, S.63, S.66, F.71, T.74, W.88, A.89, A.92, F.96 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.59, B:A.62, B:F.71, B:T.74, B:W.88, B:W.88, B:A.89, B:A.92

4 x 1PE: PENTAETHYLENE GLYCOL

1PE.3: 9 residues within 4Å: Chain A: T.150, M.153, V.154, L.157, Y.158, V.161, V.195 Chain B: L.206 Ligands: OLC.1 No protein-ligand interaction detected (PLIP) 1PE.4: 6 residues within 4Å: Chain A: L.95, F.96, P.99, Q.113, I.116, V.120 No protein-ligand interaction detected (PLIP) 1PE.5: 3 residues within 4Å: Chain A: F.145, I.148 Chain B: F.155 No protein-ligand interaction detected (PLIP) 1PE.9: 6 residues within 4Å: Chain B: D.174, S.177, T.178, A.181, I.230, R.233 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.174, B:S.177

2 x GOL: GLYCEROL

GOL.6: 3 residues within 4Å: Chain A: E.14, Y.210 Ligands: OLC.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.14 GOL.8: 5 residues within 4Å: Chain B: I.35, G.38, L.39, V.51, I.54 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.35

2 x RET: RETINAL

RET.7: 17 residues within 4Å: Chain A: Y.91, F.94, T.97, T.98, L.101, M.126, G.130, W.146, S.149, T.150, W.190, Y.193, P.194, W.197, D.220, A.223, K.224 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.91, A:F.94, A:F.94, A:T.98, A:L.101, A:W.190, A:Y.193, A:Y.193, A:Y.193, A:Y.193, A:P.194, A:W.197, A:A.223, A:K.224 RET.11: 17 residues within 4Å: Chain B: Y.91, F.94, T.97, T.98, L.101, M.126, G.130, W.146, S.149, T.150, W.190, Y.193, P.194, W.197, D.220, A.223, K.224 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.91, B:T.98, B:L.101, B:Y.193, B:Y.193, B:Y.193, B:Y.193, B:Y.193, B:P.194, B:W.197, B:A.223, B:K.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, G.Y. et al., Crystal structure of H. walsbyi bacteriorhodopsin mutant - W94F at 2.38 Angstroms resolution. To Be Published

Release Date

2024-10-02

Peptides

Bacteriorhodopsin-I: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin-I