SMTL ID : 8w9h.1 (1 other biounit)

Crystal structure of anti-human CLEC12A antibody 50C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.12, M.13, S.14, Q.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.14, A:S.14 SO4.2: 5 residues within 4Å: Chain A: Q.128, S.131, G.133 Chain B: Y.131, K.152 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Y.131, A:Q.128, A:S.131, A:G.133 Salt bridges: B:K.152

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain B: Y.27, T.28, F.29, T.30, S.77 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.29, B:T.30, B:T.30, B:S.77, B:S.77 EDO.4: 6 residues within 4Å: Chain B: T.160, T.162, N.205, V.206, A.207, K.214 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.214 Water bridges: B:V.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mori, S. et al., Crystal structure of the complex of CLEC12A and an antibody that interferes with binding of diverse ligands. Int.Immunol. (2024)

Release Date

2024-03-06

Peptides

anti-human CLEC12A antibody 50C1 Fab Light chain: A
anti-human CLEC12A antibody 50C1 Fab Heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

anti-human CLEC12A antibody 50C1 Fab Light chain

anti-human CLEC12A antibody 50C1 Fab Heavy chain

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