SMTL ID : 8wa1.1

The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: E.535, H.536, D.888, E.889, S.896 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.535, B:H.536, B:D.888, B:E.889, B:S.896

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain C: D.496, D.498, D.500 Chain S: A.27 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.496, C:D.496, C:D.498, C:D.498, C:D.500

2 x FE: FE (III) ION(Non-covalent)

FE.3: 4 residues within 4Å: Chain G: H.77, H.130, D.214, H.218 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.77, G:H.130, G:D.214, G:H.218 FE.4: 4 residues within 4Å: Chain L: H.73, H.125, D.224, H.228 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.73, L:H.125, L:D.224, L:H.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, X.X. et al., Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell (2024)

Release Date

2024-03-13

Peptides

DNA-directed RNA polymerase subunit alpha: AT
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase subunit gamma: C
PAP1(pTAC3): D
Pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like: E
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10-like: F
superoxide dismutase: G
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like: H
Fructokinase-like 1, chloroplastic: I
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14-like isoform X2: J
PAP8(pTAC6): K
superoxide dismutase: L
Thioredoxin-like protein CITRX1, chloroplastic: MW
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like: N
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1: O
PAP13(pTAC18): P
DNA-directed RNA polymerase subunit beta'': U
Fructokinase-like 2, chloroplastic: V

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

T
a

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

W
m

N
N

O
O

P
P

U
c

V
i

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit gamma

PAP1(pTAC3)

Pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like

Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10-like

superoxide dismutase

Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like

Fructokinase-like 1, chloroplastic

Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14-like isoform X2

PAP8(pTAC6)

superoxide dismutase

Thioredoxin-like protein CITRX1, chloroplastic

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like

Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1

PAP13(pTAC18)

DNA-directed RNA polymerase subunit beta''

Fructokinase-like 2, chloroplastic

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