SMTL ID : 8wc0.1

Crystal structure of EcThsA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL

GOL.1: 7 residues within 4Å: Chain A: R.107, N.129, Y.130, R.131, I.359, R.361, L.387 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.107, A:R.361, A:R.361 Water bridges: A:R.131, A:D.150

4 x SO4: SULFATE ION

SO4.2: 9 residues within 4Å: Chain A: S.294, G.295, S.296, G.331, W.377, R.381, G.409, V.410, E.413 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.295, A:S.296, A:S.296, A:E.413 Water bridges: A:G.329 Salt bridges: A:R.381 SO4.3: 7 residues within 4Å: Chain A: L.24, E.25, G.27, P.109, F.286, R.325, E.356 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.24, A:E.356 Water bridges: A:G.27, A:T.290, A:R.325 Salt bridges: A:R.325 SO4.5: 10 residues within 4Å: Chain B: G.295, S.296, G.331, W.377, R.381, A.407, G.409, V.410, E.413 Ligands: NA.7 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.409 Water bridges: B:S.294, B:S.296, B:S.296, B:G.329, B:F.330 Salt bridges: B:R.381 SO4.6: 8 residues within 4Å: Chain B: L.24, E.25, G.27, P.109, R.111, F.286, R.325, E.356 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.111 Water bridges: B:E.25, B:R.325 Salt bridges: B:R.325

4 x NA: SODIUM ION

NA.4: 4 residues within 4Å: Chain A: K.398, A.407, D.408, G.409 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.398, A:G.409 NA.7: 5 residues within 4Å: Chain B: K.398, A.407, D.408, G.409 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.398, B:D.408, B:G.409 NA.8: 4 residues within 4Å: Chain A: S.336 Chain B: W.332, G.333, S.336 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.333, B:S.336, A:S.336 NA.9: 3 residues within 4Å: Chain B: W.303, F.311, R.469 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.469

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Q. et al., Self-association activates ThsB NAD+ hydrolase for defense against phage infection. To Be Published

Release Date

2024-09-18

Peptides

NAD(+) hydrolase ThsA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD(+) hydrolase ThsA