SMTL ID : 8wcg.1

Crystal structure of SARS-CoV-1 RBD in complex with nanobody aSR29 and aSR347

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.1: 3 residues within 4Å: Chain A: G.7, N.11, V.35 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.35 Hydrogen bonds: A:N.11 NAG.2: 5 residues within 4Å: Chain C: F.6, G.7, F.10, N.11, V.35 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.10, C:V.35 Hydrogen bonds: C:V.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, W.H. et al., Crystal structure of SARS-CoV-1 RBD in complex with nanobody aSR29 and aSR347. To Be Published

Release Date

2024-09-18

Peptides

Spike protein S1: AC
aSR29 nanobody: BD
aSR347 nanobody: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D

E
b

F
E

Spike protein S1

aSR29 nanobody

aSR347 nanobody