SMTL ID : 8wdw.1 (1 other biounit)

Crystal structure of a novel PU plastic degradation urethanase UMG-SP2 from uncultured bacterium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL

GOL.1: 6 residues within 4Å: Chain A: D.68, R.71, I.104, K.132, V.137, F.138 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.71, A:K.132, A:K.132, A:F.138 Water bridges: A:R.71, A:R.71 GOL.2: 6 residues within 4Å: Chain A: A.231, K.232, A.233, D.234, V.330, R.333 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.233, A:D.234, A:D.234, A:D.234, A:V.330, A:R.333 GOL.3: 4 residues within 4Å: Chain A: T.324, W.390, A.405, L.408 No protein-ligand interaction detected (PLIP) GOL.4: 2 residues within 4Å: Chain A: H.119, R.227 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.120

6 x SO4: SULFATE ION

SO4.5: 2 residues within 4Å: Chain A: R.73, K.77 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.73, A:K.77 SO4.6: 1 residues within 4Å: Chain A: R.67 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.67, A:R.67 SO4.7: 2 residues within 4Å: Chain A: R.169, S.396 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.169, A:R.169, A:S.396 Salt bridges: A:R.169 SO4.8: 4 residues within 4Å: Chain A: D.216, S.219, L.220, K.257 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.220 Water bridges: A:D.216, A:D.216, A:K.257, A:K.257, A:K.257 Salt bridges: A:K.257 SO4.9: 2 residues within 4Å: Chain A: R.160, H.384 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.160, A:H.384 Salt bridges: A:R.160 SO4.10: 6 residues within 4Å: Chain A: P.245, A.246, A.249, I.450, R.451, A.454 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.451, A:R.451 Salt bridges: A:R.451

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cong, L. et al., Crystal structure of a novel PU plastic degradation urethanase UMG-SP2 from uncultured bacterium. To Be Published

Release Date

2024-09-18

Peptides

UMG-SP2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UMG-SP2

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