SMTL ID : 8web.1

Crystal structure of Arabidopsis thaliana MIK2 ectodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.179 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain A: S.91, S.94, P.118, N.119, K.143 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: G.355, T.358, G.377, N.380, R.404 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain A: T.391, N.392, N.393, D.415, H.417 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.391 NAG-NAG.5: 7 residues within 4Å: Chain A: W.362, T.385, V.386, E.409, N.410, R.434, N.457 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.457 NAG-NAG.6: 7 residues within 4Å: Chain A: S.558, S.559, Y.578, N.580, S.582, R.583, D.604 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.583 Water bridges: A:R.583, A:D.628, A:D.628

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 5 residues within 4Å: Chain A: R.97, N.99, T.101, D.124, Y.146 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.124, A:Y.146 Hydrogen bonds: A:R.97, A:N.99, A:D.124 NAG.8: 2 residues within 4Å: Chain A: N.463, N.487 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.463 Water bridges: A:N.463, A:N.487, A:N.487, A:N.487, A:N.487 NAG.9: 2 residues within 4Å: Chain A: S.209, N.212 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain A: N.323 4 PLIP interactions: 4 interactions with chain A Water bridges: A:G.300, A:G.300, A:G.324, A:G.324 NAG.11: 4 residues within 4Å: Chain A: T.62, N.63, E.106, R.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.106, A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y.X. et al., Mechanistic study of SCOOPs recognition by MIK2-BAK1 complex reveals the role of N-glycans in plant ligand-receptor-coreceptor complex formation. Nature Plants (2024)

Release Date

2024-11-06

Peptides

MDIS1-interacting receptor like kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MDIS1-interacting receptor like kinase 2

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